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Peptide molecular weight calculator

Paste an amino acid sequence to compute its average molecular weight (mass), isoelectric point, net charge at pH 7, and 280 nm extinction coefficient. This is a sequence-properties tool — for vial dosing, use the reconstitution calculator.

Paste a sequence to see molecular weight, pI, net charge, and extinction coefficient.

Uses average residue masses. Extinction coefficient assumes reduced cysteines; add ~125 M⁻¹cm⁻¹ per disulfide bond. Estimates for research reference only.

What this calculator returns

  • Molecular weight (peptide mass) — the average mass of the peptide in daltons.
  • Isoelectric point (pI) — the pH at which the peptide carries no net charge.
  • Net charge at pH 7 — useful for predicting solubility and handling.
  • Extinction coefficient — for estimating concentration from UV absorbance at 280 nm.

How molecular weight is calculated

The molecular weight is the sum of each residue's average mass plus one water molecule (18.015 Da). For example, a short chain like BPC-157 (GEPPPGKPADDAGLV) returns roughly 1419 Da. Paste your own sequence above to see the exact value.

This is sometimes called the peptide mass calculator, peptide MW calculator, or peptide molecular mass calculator. All four phrasings refer to the same average-mass calculation. The result is in daltons (Da), occasionally written as g/mol.

Peptide MW for common research peptides

The molecular weight of common research peptides is a useful sanity check when comparing a synthesised batch against the theoretical sequence. Standard values for widely-used peptides:

  • BPC-157 (15 residues): ~1419 Da
  • TB-500 fragment (Ac-SDKP): ~488 Da (full TB-500 is ~4963 Da)
  • Semaglutide (modified GLP-1 analog): ~4114 Da
  • Tirzepatide (modified GIP/GLP-1 analog): ~4814 Da
  • Retatrutide (modified GLP-1/GIP/glucagon analog): ~4731 Da
  • Ipamorelin (5 residues, modified): ~711 Da
  • CJC-1295 (with DAC): ~3647 Da
  • GHK-Cu (tripeptide + copper): ~340 Da (without copper) or ~404 Da (with Cu²⁺)
  • Melanotan II (cyclic heptapeptide): ~1024 Da

Note that compound-specific modifications (acetylation, fatty acid conjugation, cyclisation) shift the mass beyond what a standard residue sum will return. The calculator above handles standard 20-residue sequences accurately; modified peptides need a specialised tool or the manufacturer's technical data sheet for exact values.

Why peptide molecular weight matters

In a peptide dosing context, molecular weight is the connection between mass measurement (mg, mcg) and moles, which matters for any concentration calculation expressed in molar units. For most peptide users working in mg/mL or mcg/mL, the calculator's MW output is sufficient.

In a research or characterisation context, the calculated MW is what gets compared against mass spectrometry results. A measured mass that differs from the calculated mass by 18 Da suggests a missing or extra water; by a multiple of a specific modification suggests partial modification of the peptide. The calculated value is the theoretical baseline.

For dosing math directly — turning a vial into a measured draw — you usually do not need molecular weight at all. The reconstitution calculator works directly from vial mass and water volume.

Other common phrasings for this calculator

Different communities call this tool different things — they all mean the same calculation:

  • Peptide molecular weight calculator — the most common phrasing in pharmaceutical contexts.
  • Peptide mass calculator — common in research and proteomics.
  • MW calculator for peptide — compact form used in supplier catalogues.
  • Peptide molecular mass calculator — academic phrasing, identical meaning.
  • Mass calculator for peptide — variant phrasing, same calculation.

All of these return average mass in daltons. If you arrived here looking for any of those tools, you are in the right place.

Frequently asked questions

How is peptide molecular weight calculated?+
Add the average mass of each amino acid residue, then add one water molecule (18.015 Da) for the free ends of the chain. This calculator uses standard average residue masses.
Is this the same as a peptide mass calculator?+
Yes. 'Peptide molecular weight', 'peptide mass', 'peptide MW', and 'peptide molecular mass' all refer to the same value — the average mass of the peptide chain in daltons. Different communities prefer different phrasings; the underlying number is identical.
What's the difference between average and monoisotopic mass?+
Average mass uses the average of each element's natural isotopes and is what's typically reported for peptides. Monoisotopic mass uses the most abundant isotope and is used in high-resolution mass spectrometry. This tool reports average mass.
What is the 280 nm extinction coefficient for?+
It lets you estimate peptide concentration from UV absorbance at 280 nm. It is driven by tryptophan, tyrosine, and cystine content; this tool assumes reduced cysteines, so add about 125 M⁻¹cm⁻¹ per disulfide bond.
Does this tool handle modified residues?+
It handles the 20 standard amino acids. Post-translational modifications (phosphorylation, glycosylation, acetylation) and non-standard residues are not included — for those, use a dedicated tool such as the one at Bachem or Biosynth.
Can I use this to estimate peptide concentration?+
Yes — combine the extinction coefficient with a UV-Vis absorbance reading at 280 nm and the path length (typically 1 cm) using Beer-Lambert law: concentration = A / (ε × path length).
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